Scaffold Ga0334987_0078569

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0078569
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002130	Metagenome / Metatranscriptome	591	Y
F002689	Metagenome / Metatranscriptome	536	Y
F021067	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0078569_1322_1510	F002689	N/A	MDAMSTINATEARLSTHEEVCAIRYEQINARLKRIEGIMMKTAGVMILSMAGTIFSAVWILK
Ga0334987_0078569_2039_2611	F002130	N/A	MSDEKLNANTTLDKVLGYVDSPFKLFAILIMGVVAFAGYFLWQNQSFMMDAYKESKKLPEINTSRADDASSMLLKKTNATVVAIFKVNPLFNSRVLYRAYTKDGRDKTIEDIDVGLFSQNTANNSDVVRLMTNEIPCSDYRYAQSEVGLWYLEKGVVYTCRVSVPPDSHRFVGQITVGWTEPPQDIQQVKF
Ga0334987_0078569_22_285	F021067	N/A	MALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADAREANAQEVAQHAFYCATPQGNLMDGLYADLKQQAGFEDAQDC