Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0076470 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0076470 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2656
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2656

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F022872	Metagenome	212	Y
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0076470_1114_1941	F022872	N/A	MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPPNAYAVVFGYDFSPAGGGFKFLTAEFSTVSAGIRPILNVPQVRFFETQQISFYTGTDFYPFIHHVNVNTALTPRNVSNNIPPADNAFTLHDVIDEIDNSPISRQVYITSDKDITISVGLVQTLDPATTGAIPITNRTPALLTYGGSPQTLAVQTDLGPALNPIQFMQPSPKDFQDFGFGLLPNNANGQCFATPDATRGLLDPSVHLNTLGATFAEAAAANYFLCLHYALYTRTIPEQRG
Ga0334987_0076470_1941_2582	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPAIAVSNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMSESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0334987_0076470_49_639	F002287	N/A	MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSGLIFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYTSAGALNTFGGDRQQTLSIIVGNQQVVKNLPIQFNQGQNGQAYDRLHENAGANGDFITPPTSLLQTNMPCEIRLLTDIVIPPQVAFEVRIDSNAGVYGTGAVVCALSGYGKIFSAGNTF
Ga0334987_0076470_654_1043	F000710	N/A	MDISYRQGIRSKGFAITTPTGTTQQTLSLSGLAKSFEGILITSAFTATPGVVINPKQLRITLTINNDVCIDDDTALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0076470

Overview

Ecosystem & Geography

Associated Families

Sequences