Scaffold Ga0334987_0075178

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0075178
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2683
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F007518	Metagenome	349	Y
F064494	Metagenome	128	Y
F071972	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0075178_1_231	F002653	N/A	MSEAMSQEELEQRINKMSDEEQAHFKLLIYKLVMCYGEGNAQGVVIIGRAEDAFAGVVTLNCNEMEASQLMLAANDF
Ga0334987_0075178_1156_1419	F007518	AGCAG	LGRRGDAMTDWTSEEDEAFNEVEKHSNLGKQILKDIEGQPYVFDVYISPLQRNQVLEEVAKEFDKMKAFGDTAASFACYVRDMKLEK
Ga0334987_0075178_1835_2104	F064494	AGGAG	MTQEEIIKLIEDNGLTLHGDIEHFAALVADHVYAKYLELPEAKQSGTLSVTAPLPIAYLCENAVGHKYFRWKKPCSTYKPIPLYTKEQA
Ga0334987_0075178_2101_2322	F071972	GGGGG	MKPIAWYDPSNGAVSADKDSPLFTPLGQVLPLYPQQEWVGLTKEERHEISLANKPYVADIMAAHEAKLKEKNT