Scaffold Ga0334987_0059804

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0059804
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3102
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F029029	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0059804_1233_1730	F009064	N/A	MIVNLSQEEVRVCTLLAVERWLTKFGSTDRPNYAQGKADGKLEPEINANIRANVCEWAVAKQYNLAWNTPWYPNGLHTRRHPLSDVGNNIEVRSVRTQTSIPFWEKDKGRIIVGAKCLDTEYYSSVEVYGYIKPEDYMNDEYYDNYINGWRVPLTLFKEYITGVV
Ga0334987_0059804_2159_2410	F029029	N/A	MKKKMTQEPREIKDLFQKDYSNSMDLRGNPIGDVCVCGSELFTAIIAFEAGEIAFYFLDGECVNCGSLVTLPTPIDNIGMDCD
Ga0334987_0059804_2382_3050	F008296	AGG	MNEAWVQEYDLLVSSLAQEYSRKYSIIETADIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAALKYCEQEKARKFGYDMVDLYYYDPSVIEAFLPSILADTYEIPSKILDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNKLAEAKQNILRLKFTTDNYEWNELAKELNTSADGARMRVTRAINSLIRILGGWRTFNDTDNLVDKNEDEEEDDTRA