Scaffold Ga0334987_0059600

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0059600
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3108
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F046192	Metagenome	151	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0059600_2179_2442	F069714	GGAG	MNITVIESYMPEYTKAITFEYEGEEYLAEVYVGKNCSDYTLYQGNKRLEDKPAWLEKAELDPEFSFLFFIDDLAWEYEANKTGKVSA
Ga0334987_0059600_2442_2711	F006618	AGG	MSKMKQHLEEQIVISHSSEESTGWKRYIAFNYQGNEYELTLFWEEFNGYDTYWRVPDKIPAWVAEWDSEAHQGMSFEHYLDDLTWEMNK
Ga0334987_0059600_63_320	F046192	GGAG	MAKVIKTTTLLADSEGAIWVEAQLSEAQVKRIIKQYERFGIKLTAYGSPNQVSKQVEDISAFFANDERSRPLVEAGRFQVIGVGF