 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0051452 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3415 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_39_49 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021066 | Metagenome | 220 | Y |
| F066715 | Metagenome | 126 | Y |
| F072826 | Metagenome / Metatranscriptome | 121 | Y |
| F083632 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0051452_1141_1416 | F072826 | N/A | MRYFRTADAALYETIRLQLDAAWGHPTPDGKTLTCFDPAAVAPRDAQGRILLAVDDAFCGYYAVAAVLPSLLASGSVEEVAAGEYLPVVPV |
| Ga0334987_0051452_2206_2562 | F066715 | AGGAG | MSNATISRSYRDFDITLHSATSLATTLDMRDVAGAILSVGTMSTNASTLQMWVGSTPTGTFRRLYKVDGSVADLTLAPSSTEGRAYSLPDEVFGTEFLKIVSATTNSTGTTGFVMFKS |
| Ga0334987_0051452_255_473 | F021066 | GGA | MAHALLKFDLSDPDDAREHRYALAGREALIALELIESRCRSIIKHGDPSPEVQRIVEEIRALVPYELTSLLV |
| Ga0334987_0051452_2887_3228 | F083632 | AGAAGG | VSLEDLDAAVWASLSARKHLAGKPLVSRLVRRVVRKWPTVAISQARPDSYGVMLEQVATSIERSERQNVRMGIILTLVLGVLIQEIVKAVLAWWMKSASNRIALVGWQTEMRR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |