Scaffold Ga0334987_0047704

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0047704
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3581
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F017818	Metagenome / Metatranscriptome	238	Y
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0047704_128_370	F017818	AGAAG	MNKDAYYDWIAENDTYPTHNHKWIVGLYNKYEGVEALHRYFGVFETQNEARVFAADYRDKYTKPGFISKVRVFPLCEVVK
Ga0334987_0047704_1781_2065	F016800	AGGA	MLDAFTDYPIPSYGDVAGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIQFTDEELKTLPWTEVSFPHSI
Ga0334987_0047704_2520_2705	F077968	GAGG	MTDTWKKWNIYTSIHLFEYCVYSWRNHMWNHLDGYPNEERMRNLFWYYLNYGNTNTYYEL