Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0046906 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0046906 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3619
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3619

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F032255	Metagenome / Metatranscriptome	180	N
F085372	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0046906_1589_2074	F032255	N/A	MANSQGLAYQFGSPATVTMFQTNNSTAVFTGLTSIESYDLTHEADTEEVRNSAGEVVGHIGYNERVVLNLNLIPSGATAAAALAFCSLAPVNGTVRISGAPIIAMMGYGDILNTEDILMGGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTAGAAVALNV
Ga0334987_0046906_2087_2569	F006107	GGA	MNAAALRAELAVADYLAATDWSASGAGTPTCLTSYSRGLYDDPDEQDAMPNFPRIIVSTNSARPMQRTDLTCELEIAVELQLSADDTDEADVLTTVQVLDNRILPLFDESGASALDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATI
Ga0334987_0046906_2566_3363	F005024	GGAG	MTVDSGKFDLAMKQYLMTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGAPAGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTANLNGGQGLYGKRMKAAASALMKKSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPAGYRAPKKTNSALVAMANQYGLPEENVAVHKGTVAHGFQAVPGFNPTAFVSMRTGIADSQYNRVSEIYNTAMQKAMEDETTEMINHMTEALLANGKVLEDNGIAIK
Ga0334987_0046906_3378_3614	F085372	N/A	MDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0046906

Overview

Ecosystem & Geography

Associated Families

Sequences