Scaffold Ga0334987_0041048

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0041048
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3932
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F068783	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0041048_112_612	F068783	AGGA	MPNDILIKYGSQQTITAAIASLASDTNLLAGLESSIIDNTSDGYEDIILSGFITVGTGPTASRVIEVWAVAWNGSGWPDVFDGTTSAETITSQDIKNSICKSVASISTTNTADRRYDFTGVSARSVFGGVLPSKFVLFVTHSTGANLNSTAGNQGLFYEGVKPQVQ
Ga0334987_0041048_3180_3422	F029017	GGGGG	MESIDMFSWYALKLVLWAGPLGVGAFLAGIAATAFYAGYSMRPKRTDKPMGNVKMDHIKYDILPDGTLGPGDPRGLEDPE
Ga0334987_0041048_3422_3796	F018127	GGAG	MAKQKDNWIPWLIVGGLVLYVFSQQPKEGGDPSTAAAVSAARKTIPNIRAAYREAFLDAAKGIEDGSIKDQEQWTEFIKQNAGARQRDALDKVYEAIDKLKLPVTFAGKEKELAEINRQIAGAW