NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0036631

Scaffold Ga0334987_0036631


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0036631 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F034542Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0036631_1489_2790F034542GAGMYSQQAYGGLTYSFKYFVSGTPGLGVFLPGMCFMYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDADTYAVKLSSNFGAPISFFAGEVLSNRFNADGTDKQYGFNNYTVTAVGVDNVPLPPSYAPIFNTLFLSHTDSTSWSVVDSNTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRRKYPRTRPQNFDPGYFDAGVDGTPRVVPSSDNPGFVRTFGFIYINQIYNIPSFSESTYSDPNFFYYQPKWCKHIYASMWDLQRAYDQGVVTGPWLPQPTDEPLNEYYREYFEKELERQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLAGPNTLQGVSFEMFTIDQFNPFDPASFVVGIYDGGRYENGVLVSQPTNVFDGGQYLNGVIVPPAGFPSLINGGVY
Ga0334987_0036631_3025_3579F001215GAGMASTSTNKQPCLIDRPFLRGARITSATGTCNPTNPNLTDLIQLVRVGDLPSEDAALVEDITIVSNEGYPDNSGRRSVDLGLYVYAPNQAAPSTSAALMVGRVEVGLSGSTRGIPQSVQLFACNAPTPQVGDTNLLAPIQIGKSEGIYLEKGYILAVGYIGNGSTAVSGGLSPSGITVFCQGGFY
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