Scaffold Ga0334987_0030914

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0030914
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4664
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F043899	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0030914_2601_2936	F008607	AGTAGG	MDAIYTKVAEFMTDSVVFTPKASVDKYNKTTFGASNTNVTVTGRLIYDTTKSKDVQGIEVVDIGRFITYGPATSITVNHRMVVGADTFTINAVDNLADENGAHHTVIRFGR
Ga0334987_0030914_2939_3349	F019308	GGCGG	MAKSSFRFDLFGDKELVNALEAGKDETPQAIAQAIWEEANVIFAKSQVLVPVDTGILRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIQKGHRG
Ga0334987_0030914_4193_4663	F043899	N/A	MSLDDALDNLLKTSEMNSVQKTEPRQRQAEWLPGVTWQGEEGTVTTQPMEGDNAPDWSGVLRMWGLDPEHFQVVEPVLFNVWGDTLGILNRQWKGKVIRKGKQEFADIDALIVEIKKHKPRERKPMVGGASLVVCASDWQTGKRDGDGLKGLVGRWL