Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0029999 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0029999 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4746
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4746

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0029999_1971_2354	F009600	N/A	MWISDPGQLKSYKVVVGKVPSLNAFYSSKHWTVRAKAKTKHCEEVTLQLLQYDREQITDVQILCRVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDTTIAKDTAEITFTGLLVTE
Ga0334987_0029999_2545_2982	F015723	N/A	MPKIISITPTGQWQDLYKLEVRFDSGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTIKIQRANAFGASTGGAYTPSAPSFAAKQDDRSASIIRQVALKSAVEYACAAQHDINTILANAETFNAWMTGASSAPASHTEHFANRNDPF
Ga0334987_0029999_4047_4307	F009202	GGAG	MLAGTAMWLAKQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRIDSEQMIYEIQRLQGIIEDQL
Ga0334987_0029999_4304_4531	F010908	N/A	MKQILSPFQKYECFSVDGVDYLVTDVTIIQDKDDNLVEWASEMKFKRLKDHKHYTMPITKILTNYKEGRAKHCKC
Ga0334987_0029999_863_1237	F014228	N/A	MWPILLTATLAVVSSCATVKPVLESVIVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0029999

Overview

Ecosystem & Geography

Associated Families

Sequences