Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0020702 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0020702 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5912
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5912

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F037129	Metagenome / Metatranscriptome	168	Y
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F082372	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0020702_2110_2421	F077197	AGAAGG	MFLPIEFKDEQGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTTMPFDLLSKEIDEAWESGSILILSAMLSEKAKLMKQSDLQNSGIEELDPLSEV
Ga0334987_0020702_2357_2611	F077051	N/A	MTENELTGLGFNKVEVNDLESQNGYDYYYYTLDIFNNLTLISVDNDRVQDENWYVYNLDWPDQFRLQTKDQVLQFLSSVGHFVS
Ga0334987_0020702_2758_3219	F019119	N/A	MKSFLGIPSDTSFKMEKKIMDEMLALSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRVKEHGEYSKVNKAYTKIAKDYPHEILNHEVFMKTMSPANG
Ga0334987_0020702_4092_4271	F037129	N/A	MNVNKKDYKVVEVQNGYTTKYAVKKRIFWLFWKTIKNSAGFDMQYDTKRAAQSYINFLK
Ga0334987_0020702_4919_5089	F082372	N/A	MSEEQETGWISALIKCDLCGHESLSVHHESCDKLECANCGRMSHYEVLEYYTNEEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0020702

Overview

Ecosystem & Geography

Associated Families

Sequences