Scaffold Ga0334987_0019830

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0019830
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6059
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011484	Metagenome	290	Y
F018703	Metagenome	233	Y
F026822	Metagenome	196	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0019830_2282_2467	F011484	AGAAGG	VRELEQFLNVEGEWLLERLSLAYSKEGNPADRNYYQGRLDQLAQVRGFLGQPQIMRERES
Ga0334987_0019830_3457_3717	F006618	GAG	MKQHLENEVVITHSSEENTGWKRYIAFNYQGNEYELTLFWEEFNGYDTFWRVPERTPDWVAEWDSEAHQGMSFEHYLDELTWEMGK
Ga0334987_0019830_3860_4129	F069714	AGGAG	VNINIKESYMPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELDPEFNFLFFIDELGWEYERNGISEGEVKI
Ga0334987_0019830_4283_4438	F026822	GAG	MGDEYALTGTELDIVKCKECASEYDYAEYHSYTCSDCEDKMIARERERVSG
Ga0334987_0019830_4693_4914	F018703	GGA	MERVRQRIETAKLQAVRQRNYRRARDRALARLSKDYPNVYRTYLEEEMRADESLGKKWLDITGNTRTTSSRTR