NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0019772

Scaffold Ga0334987_0019772


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0019772 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6071
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F011077Metagenome / Metatranscriptome295Y
F017788Metagenome / Metatranscriptome238Y
F020851Metagenome / Metatranscriptome221Y
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0019772_2389_2745F017788N/AMPSVSAHAATKSLKTKQNKVACKNIKTNYKSEIMSKWADGLASDQDVLKEIDLNIKMLTEKQKSSTGKIKSVISTWIQAEKNTKTALIDKNVQNITYAMNLKISAITVFDKTCKSIGK
Ga0334987_0019772_3754_3876F020851GGAMKDLIDLAISMTEIDTGMELSLEEREAMIERIFTRLESIN
Ga0334987_0019772_4003_4161F011077GAGMITDNLTWAEEDQNLWKGWTYSPKKNCYYFNDIGNESLIAFWADKFLNQAYE
Ga0334987_0019772_4158_4334F098668N/AMKNISNLIAASGCFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKNIEKELTK
Ga0334987_0019772_87_317F004475GAGGMTNWTDELTDKQKKQVWEFIVFTVKEIREQIAVDIQATSQLWKAKGLNKSRRTQKAFDISAAIARGQNEIPMEYSE
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