Scaffold Ga0334987_0017339

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0017339
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6541
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035300	Metagenome	172	Y
F041767	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0017339_5167_5334	F035300	AGG	MEDELKIREDEGKYYVYFNGPWGQCAYQSDPFDTLEEALAFKQEQENSADFGDEE
Ga0334987_0017339_777_1019	F041767	AGGAG	MKDLDYPHGAKIKWGRPLDTITQWDEVATWGIETFGLPGDRYITDISINEMIWWFRDPRDQTLFTLRNGSAQCIRLQSQT