Scaffold Ga0334987_0015992

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0015992
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6858
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0015992_2326_2568	F034503	N/A	MNKTQAHEILEQRKQGFAVSQHLVNRALVVSGDLGMACSPCQATWVEGPSMAQGQGIRELFYPFVERDNPGLNSTNESPQ
Ga0334987_0015992_3415_3648	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEQEFEDKMNTYELDQQYAEYIMEHRNVGNGEMLIRFMERGELYEDFKEHIMWGDK
Ga0334987_0015992_4179_4493	F009140	AGG	MLDMTHSATDNNSVSFHYQRYLPELERFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIESGSIREPYDGKELRRNISRRGCYDFLKYPSRFGDNLFYHKGEQA
Ga0334987_0015992_4688_5038	F012211	AGGAG	MPTDEERFKYECWAIVQELDPEDIADAIVDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKITAAKMDGPFQQMFDE