Scaffold Ga0334987_0015663

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0015663
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6930
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F043829	Metagenome	155	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0015663_24_320	F011226	N/A	MAKQISPVNVWVNGESKQAEYFQVTCINDNYENSATNYWQLFTKVVDAEGVESMGEQVSQGNLTIQGEEYVLWGDQPAMAINAWIYNWSAEKLNLTII
Ga0334987_0015663_3735_3923	F043829	N/A	MSEMSLPKWGDLNTFERHKLLGELIDAMIYSGEAVQHLKVTVEQFRLMGYVKSIILPQNEEQ
Ga0334987_0015663_4295_4576	F091307	N/A	MKKQVTTNVRIPAEWLTISINDIMIMVTATINDAGDYIDVNVREILMPGYHCLNIMPQFHSAFYELVEQKCMDAYTFKMDSEYDHEYYADYAF
Ga0334987_0015663_4566_4901	F093533	N/A	MPSERIEMTLEVKGEVRATAFPQRTYEGIENQRKQWYYFYGLKSIKEWEIYISHISPMKENTPFKIERPFPYYIKSQQNDTTESESKPANLYCEPVDTSGGFVQTVGKRQG