Scaffold Ga0334987_0015250

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0015250
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7032
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F057881	Metagenome	135	N
F075866	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0015250_1531_2055	F075866	N/A	MAEFDFLDDFGISAQDAEQPKNAYDRFIIELSNKLAEEFRDYTKKVASNTGALAASIIPVPTGQLSFRLEADDYYPFVDEGVNAVGTNNYGSQFSFNYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLQPKRITENVINDSVLERIGRDLAEMTGLLFEINFTRNGNNTI
Ga0334987_0015250_5547_5813	F002391	N/A	MANSQSVLTAQQGTFIVNNTVEKTVNHDAIMVLEDTVFSSIKVANTDVKSTYIAATGTAVKAGAIIRAINGAKFSGVTLTSGSVCLVL
Ga0334987_0015250_748_1464	F057881	GAG	MMKQLDIKLPTSISACTPDQMTRWLMMAEAMKAHKEDDITQLLIFQCQLLSLFSGESINKIKRADIQSIQVAANHMLQLLVTYKYQEPKPEISINGKTYCFEKNFAHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNDNRYKEFKENFPGDEFLNFFSFFLDLSHKRKLAILGIQMARQRMEMMMMEQDLKIQSGLVGQLSFIDYPKKWESVWRKLHNSLM