Scaffold Ga0334987_0014640

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0014640
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7191
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018350	Metagenome / Metatranscriptome	235	Y
F036665	Metagenome / Metatranscriptome	169	N
F048258	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0014640_3090_3470	F018350	N/A	MTFKQIINKYPIVNTDWECNHNHIGSMSHRIMEVTGIDSYNGMKQFHQYFGITGYFSRTRVDDGSGVIFNCDPWMREFKMYYTRGGIKNGIYECKRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0334987_0014640_3534_4097	F048258	AGGGGG	MVWYGVVEWVLMSDGYDNGKMNMLLERYPIVNMGWKYVGSSDTIRWSLGEVVVNMYIGNGGNLVNKNGMKPYDIVNGEYINGAVETRGYNNVYSYFIRQVEYSRMVSMNGGQEYYIKHHNDVSELLTDPWGRRFIKYMGIVRNDMVDKYSDVYEGLSIQSSRNKNVICSVDVTSIEGHRVYCLHLYS
Ga0334987_0014640_5251_5460	F036665	GAG	MNNKSWKPEVKVEGKWSTNGLRFATEVEAYESAMQTRMRWWLVDDVRATESEDAVNYQMTEGKLVAVSN