NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0012401

Scaffold Ga0334987_0012401


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0012401 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7878
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044903Metagenome / Metatranscriptome153N
F083690Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0012401_1_312F083690N/AMPEITADKIIGKTLFAKKDLTRLNSSLVKIGTIVKGSPVGQVYSYIQRGGNVYWQFIDFNNKPYFILHTADSFKFTGDVKQAVQEQKKEVEKLEKQEKGSVPFY
Ga0334987_0012401_2267_2641F044903AGGAMGAIGKSFFMDALGLVAGAAAARVLTSSGKILPNIDPKIKSAGVVAIGAFFPKLIKGSLGQSIGNGMVAAGGLGLLQSTGVLGAMDNAMEIPVSVMAGDDLSVIAGYSEDNLSVIAGMDEEYSY
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