NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0011606

Scaffold Ga0334987_0011606


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0011606 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8174
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010682Metagenome300Y
F080077Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0011606_1_213F080077AGGAGGMTINPNQISVSKIYPGNYTNVLRYWHEEKTMQFENANGVPTNYTNQPVGGPVGVVFRPGWIAQQAIGYVDL
Ga0334987_0011606_2120_2923F010682GGAGMVYTPQTNWKYDKNLYHPIQSGPQRTGDNLNLTNTYLTISSGYVTPSGINQTWYGVLDEGADFGLIPVGPPNLSGYFTTDWKAVPPAPSGYWTNYENVLPHSSGLLDTYVGFRAQGLYRVANATVQTAYGPRPGLRNFGTHIWYGEQIPDNQNYDPFKTPSSNDSSLDGGGITGGGVTHPATRSPTLTNPTNNTSGSRAAWVYHYPIYCQSFTETRYTGVPGQMGIPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRTFSPGTKI
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