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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0011389 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8255 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014725 | Metagenome / Metatranscriptome | 260 | Y |
| F026578 | Metagenome / Metatranscriptome | 197 | Y |
| F077048 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0011389_2641_3078 | F077048 | N/A | MIILNEGYNTANATCSRNKNLTGSVCYLFSFKHKLSQEVWRLVPYRIQPTVGYSPGYDLFSITIDPSQPEAYLTGATTVGQTNVHLIEGEYYVKVWEQSTSLSGNTNPSLAYDVVYETIAQVNYSASTNPLTYSGTSDIYKIYEG |
| Ga0334987_0011389_5349_5828 | F026578 | AGGAGG | MWVLGGSGNTITGYTVTSSQVTAIGGVGTWFKFELPKQSGSLSETLGVNTVSQSVTFQPEIVVNLPKLNTQLRDTFVDLVSQNEIYALIEDNNNRYWLVFLDNGGLVTAGSLNTGQAYTDLNGATALTMSGGEPTSIREVDVTTTIAAVFTTGGFTFQS |
| Ga0334987_0011389_5935_6885 | F014725 | N/A | MENKKKLSFNYDLTALPTYNSYGSDMLIKAILGLTLPKYATIRPNLKGTTEKVGWLENDVILQDLSCGFDPTGTTYQELVTVDLCNKKVNQQLCPYDLYDTYLSQSLSNANFQETVPFEEVILTDISNRIANQVEKQLWQNNIGTGSTIYDNACFNGVTKLITSGNGATQIPYTAATASNGLDVFTKIYESIPANVLHRDDLVIYCSYANYRALVSSMRNQSFINLFDFNDKGVSSGQDWVLTLPATNVRVIPTVGLDGVNAYYAGAAAYYMVGMNSEIMTVKSIYDPFEDIVKIQAHVTYGLGIFDPGSFCVCKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |