Scaffold Ga0334987_0009281

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0009281
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9232
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F016114	Metagenome / Metatranscriptome	249	Y
F025444	Metagenome	201	N
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0009281_1042_1230	F030991	N/A	MTLKYLGCDQKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKHIVLKIYNRTYGIKT
Ga0334987_0009281_1717_2082	F003659	N/A	MTAADVIGRYLIAKKDVPVYDGPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVVIAPNVLPSVDVFPAGGIKKYAIFGALGLLALLILK
Ga0334987_0009281_3719_4051	F008615	N/A	MNTPNTFGAKMFTRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFI
Ga0334987_0009281_4054_4221	F016114	N/A	MVNKYWNAAFFDSRDVETLNEMAAMARRQLICVRELQRDELLRLKMKYPHLTTKD
Ga0334987_0009281_5372_6007	F025444	N/A	MYLQLAGLEPLDTAENPLAPGATPYKYKNYYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKTPAAVVKTPGMGVDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQLSDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTTLPGWVLPAALGLGAVLFLRGRK
Ga0334987_0009281_7041_7598	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAAINHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPSAADGIAYIGLGGGFSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTAASSVIDLEGVGILIPPQVEYYVIAKVFNGSSRTGEASRLGCYLFGTGALLNFNTTI
Ga0334987_0009281_7601_8140	F006697	N/A	MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSINAAAGQQFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSATSSLADHLNLNITVGNQVVLKDFDPSFNATSRGLAFDRLHSGFNSAGNLEVRLLTEIVIPPQVNFKAELQISNALLAANDDVTIIFKGYGRIFSAGNSF