Scaffold Ga0334987_0007088

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0007088
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10625
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021295	Metagenome	219	N
F025754	Metagenome / Metatranscriptome	200	Y
F048758	Metagenome	147	Y
F050978	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0007088_2725_3858	F048758	GAGG	MIPVYEEVVRKPNVMKNRNPLKQSKSRIISLEDRMKELQTYKGWQRLIAEYRKQGIIIDPKLRPLIKMVKLKFLFIDEDIQRALDAKHCTNIAGIGNFNPMYLQVIYCVKVPGKEEYHSVDAQHTATFVAAMIDAGLFAGESDWREVEMPVLYIETTSKSFARKAFAIINGKGKKKISAWYEHRTKVMSVRIDGSNDPDDVVAFDKQVICETYDCYPVDKESDFVGLPGTFTHMQALNLDNEILEMACKFHNTYFHYDEINGSLWFMIEDLFKAFKAAKIKITDKFLGELAGILQGYFAGQAGFHEAVHSAHKQWGIHTYGYEVSWQDEAIAAVLVLLYQRLGGTQRIPKPLLDRFEKILDFVADDIKALYEEVETA
Ga0334987_0007088_3855_4166	F025754	AGGA	VSYFYILPGPYRTGFGITGDYERREKDYTGAWGGLAKFSYLFEGTSTHIKRLENIIKIQNRDMLWKVDDWETEWLGNGWTTEQLLEFVQATITERHLKIKQVR
Ga0334987_0007088_5_256	F050978	N/A	MHCCFDYAMDTVDYIRLDCGAQQALAYKHQLDLDGLIVNQDYTWRYQKPVYDEFAWTDSEVSHVTFTFQNPALATFYQLKWAR
Ga0334987_0007088_8936_9196	F021295	GAG	MLEFEDDPIYEYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFVKLATELNMNELASVQIPQGTTIH