Scaffold Ga0334987_0005996

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0005996
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11532
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F028461	Metagenome	191	N
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0005996_10276_10725	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVTQKVLTKTDATGAVTYLVGSDKTGKLIADAAPIVVGLLLQGQSNTFAKEAGKGMIAQAAGSLIKSNFPTLGITGDGNYLGEGTMMSGLDTGVDNPMISAVPSDSSYVAPSIGAAYYDDGSEAAY
Ga0334987_0005996_3129_3905	F088542	N/A	MAKKKSTVQYKDRKYNYPKGFTKYGKAKTGFMPAAQGAKVFVENNLEKIQKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKDKTYYDPTGVLRKALDNLPALKGKRNLTNLLPEKDFKDFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKAKFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKIGVNAIDRMREFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP
Ga0334987_0005996_3907_4779	F028461	N/A	MKKQNAATMFKNPQLQESIIRQYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASDRTVEILQGDWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASSWELKEGEYANIFFFVINQITDLMAWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKDFSVVRDGDKLFINMIKNGEEKPYTMYDKNLARNFTKILQQLENEQNPLHISRATA
Ga0334987_0005996_8048_8536	F019993	N/A	LLLINFVEMKQEVKLILVAGLGYLGFKAYQIYTAIKQLSYAPTGIRFSINKDRGAIGGTLFVDIINPTAATIKIDGFTGTVTTTDGTMIGDYKGAALTLRPGVNNVRISWGSRSSLTLVNLALGIAQGKFPVLSFNTVYNIKGLPIPTKFKMNTAAYKPTFI