Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0005360 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12253 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (24.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007859 | Metagenome / Metatranscriptome | 343 | Y |
F009135 | Metagenome / Metatranscriptome | 322 | Y |
F010081 | Metagenome / Metatranscriptome | 308 | Y |
F019468 | Metagenome / Metatranscriptome | 229 | N |
F019476 | Metagenome / Metatranscriptome | 229 | N |
F042296 | Metagenome / Metatranscriptome | 158 | Y |
F072270 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0005360_11755_12213 | F019468 | N/A | MTIEKTYKLTIKDVYYYLDEKELNALYEQCRMALNINKDLPTTNPVTPTIPYPYDTYPWYTPKYPNDTGYPYWTGPTTTCGTINAGEGICVMDTNWQPNLCNTVKSSNDINFLSDDMAVHEDNQKWRSSVQQALDKLSAKTNVTTSDGTTIR |
Ga0334987_0005360_4449_5117 | F072270 | GAG | MKLETMDLNVFLTHLSNISALEYLLEILPKCNVDGPWIAGGCLHRTYRKLPLENADVDIFFKNKEQFEQFVSAMSLSSLTVGYEIKSTIFSEWHCTLTIKYMDVDWKIQCVTFKYFDNIELLFKSFDINVCRIAYDGNNIIYEDTVLNDIKENKLKFNDGSIYYPSVTLKRLVKYIKMGYDIDDIHLKSLTHAFYKSKKKEIDILDQDLITKKTIDTYKGLN |
Ga0334987_0005360_8146_8340 | F019476 | N/A | MNDNKVKTARIVLEIEWTSVDPTLDLPALWDWKRIKIPMSLDKVKYIGIQPQNGPENVTNWMGN |
Ga0334987_0005360_8811_9002 | F009135 | N/A | MNKPKYYLTINLPPNFDEVDADTIKNDLMTYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED |
Ga0334987_0005360_9248_9490 | F042296 | N/A | MNLFKSIIKWTGVIVYAAFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYMKKENAQKYCDTYKDSHNYTFEEITISE |
Ga0334987_0005360_9487_9744 | F007859 | GAG | MNKLLIILLLCTGCSGTSMFLRYSYNRSLENLPPCSKVHAINNDYITYSMVEDSTNSVYVINTNYYKAYYTTEGSIYKTVKTNAK |
Ga0334987_0005360_9734_9943 | F010081 | N/A | MQSKIDNIIKDYTEKMQEVNKTKSIPMIVKELDGIVYDMYRELYGLRDIRSNNYYLNSFIADDKKGHCC |
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