Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0005360 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0005360 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12253
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (24.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12253

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (24.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F019468	Metagenome / Metatranscriptome	229	N
F019476	Metagenome / Metatranscriptome	229	N
F042296	Metagenome / Metatranscriptome	158	Y
F072270	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0005360_11755_12213	F019468	N/A	MTIEKTYKLTIKDVYYYLDEKELNALYEQCRMALNINKDLPTTNPVTPTIPYPYDTYPWYTPKYPNDTGYPYWTGPTTTCGTINAGEGICVMDTNWQPNLCNTVKSSNDINFLSDDMAVHEDNQKWRSSVQQALDKLSAKTNVTTSDGTTIR
Ga0334987_0005360_4449_5117	F072270	GAG	MKLETMDLNVFLTHLSNISALEYLLEILPKCNVDGPWIAGGCLHRTYRKLPLENADVDIFFKNKEQFEQFVSAMSLSSLTVGYEIKSTIFSEWHCTLTIKYMDVDWKIQCVTFKYFDNIELLFKSFDINVCRIAYDGNNIIYEDTVLNDIKENKLKFNDGSIYYPSVTLKRLVKYIKMGYDIDDIHLKSLTHAFYKSKKKEIDILDQDLITKKTIDTYKGLN
Ga0334987_0005360_8146_8340	F019476	N/A	MNDNKVKTARIVLEIEWTSVDPTLDLPALWDWKRIKIPMSLDKVKYIGIQPQNGPENVTNWMGN
Ga0334987_0005360_8811_9002	F009135	N/A	MNKPKYYLTINLPPNFDEVDADTIKNDLMTYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED
Ga0334987_0005360_9248_9490	F042296	N/A	MNLFKSIIKWTGVIVYAAFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYMKKENAQKYCDTYKDSHNYTFEEITISE
Ga0334987_0005360_9487_9744	F007859	GAG	MNKLLIILLLCTGCSGTSMFLRYSYNRSLENLPPCSKVHAINNDYITYSMVEDSTNSVYVINTNYYKAYYTTEGSIYKTVKTNAK
Ga0334987_0005360_9734_9943	F010081	N/A	MQSKIDNIIKDYTEKMQEVNKTKSIPMIVKELDGIVYDMYRELYGLRDIRSNNYYLNSFIADDKKGHCC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0005360

Overview

Ecosystem & Geography

Associated Families

Sequences