NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0004725

Scaffold Ga0334987_0004725


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0004725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13045
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (36.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F010908Metagenome / Metatranscriptome297Y
F024249Metagenome206N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0004725_2754_2981F010908AGAAGMRQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLSDHKHYTMPMTKIITNYNEGRAKRCKC
Ga0334987_0004725_488_817F009600AGGVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0334987_0004725_5073_5399F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMDITYVEETYNEDGYTNTVAYPTTSIYGETPKLADDIYIKWMNWATTVASEE
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