Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0004596 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0004596 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13233
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13233

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F080936	Metagenome	114	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0004596_1159_1803	F080936	N/A	MQQSNISTLSLLAICLFLLLLLMRTCGALGEAESNAMYLDSLNNEYAVRIARDSSKMHSQGVQLAAAGTKLRALELREPEVVIRYQTRTKVVTQVELGETVYIDSFPHLRLPRYFHRPGKWLEIGGQISRAGRLQLDSIIIPVSYTVAIGDTLRKGFLSRKRDKVVRLGIDNPYVHVTGMNNIIVAEPPKKWYETRAFAFALGGITGFAIGRAK
Ga0334987_0004596_12291_13202	F008936	AGGA	MASFDSLVRDKIKLFESVPDKLATAAIKTQAEIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRSFLSSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGIRDIQDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARAEGFID
Ga0334987_0004596_7940_8494	F030677	N/A	MPTPAEIQKNLDELYNDWTSKFTALYGPVRELKRIMFKRIFGTGSSGGTNTAGDKLPTKPYSTKPIYVSPRALASAPSKYKVGKRGEPIKSLFFPGGYAELKKGTSRKLPLELTGRLKGGFLSSDVLTEGLEAAITVPASEEGKIDGLEKKYGTIFLPTPEEQAEMLEDHAAELVQQIINAMNK
Ga0334987_0004596_8496_9533	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIDAANVNVPILIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKMDIAIVYESDINTVKFTPKRGTCTSCGGGIKESHICPFVDAIGIELTTDGTNVLTSKSSKYTTGMSLTYNVNCDRQGWLCSVGGTMALALAYATAVEIYNYALTISQNQRVNTTVIVNRGQNKTELMDGIMAARDIAATRYSEDLGATLQNMRLPDDTHCWDCKRNMKYVTALP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0004596

Overview

Ecosystem & Geography

Associated Families

Sequences