Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0004403 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13457
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

153

Metagenome

132

Metagenome

118

Metagenome / Metatranscriptome

112

Protein ID	Family	RBS	Sequence
Ga0334987_0004403_3047_3454	F060719	N/A	VLKINKMTPKHLSINIQDEISADKLKLAYNKQRSDRARYEAENSVSKSTGQAFQKYYVETKVFYTTANIGSECNEITFINNGTTALVIADVPLQPNQSLRISGNRGEIDTTQYQLAFATPINTGNQLIVIRKLYI
Ga0334987_0004403_3711_4103	F083690	N/A	MPEITADKIIGKTLFAKKDLTRLNSALVKIGTIVKGSPVGQVYSYIQRGGNVYWQFIDFNNKPYFVLHTADSFKFTGDVKQAVDQQKKEIEKVEKQEKGSVPFYIEKYGKWILIYGIGAYLVATYIKSRK
Ga0334987_0004403_6095_6469	F044903	AGGAG	MGAIGKSFLMDALGLVAGAAAARVLTSSGKILPNIDAKIKSAGVIAIGAYFPKLLKGSLGQSIGSGMVAAGGLGLLQSTGVLGAIDNAMEIPVSVMAGDDLSVIAGYGEDNLSVIAGMDEEYSY
Ga0334987_0004403_8769_9185	F075869	N/A	MRNWILIGLAGLTGWYLLGKSQLAAKTKLIFKKLRYANKKFELVFGVQNPTAQTAKISAITGEVYLGDKLIADFSSFGEQKIAARSESELKIQASPTIGILQLITSKGWLKKGLAYTIKGTGNFDGIVVPFDYKANLI

Protein ID

Family

RBS

Sequence

Ga0334987_0004403_3047_3454

N/A

VLKINKMTPKHLSINIQDEISADKLKLAYNKQRSDRARYEAENSVSKSTGQAFQKYYVETKVFYTTANIGSECNEITFINNGTTALVIADVPLQPNQSLRISGNRGEIDTTQYQLAFATPINTGNQLIVIRKLYI

Ga0334987_0004403_3711_4103

N/A

MPEITADKIIGKTLFAKKDLTRLNSALVKIGTIVKGSPVGQVYSYIQRGGNVYWQFIDFNNKPYFVLHTADSFKFTGDVKQAVDQQKKEIEKVEKQEKGSVPFYIEKYGKWILIYGIGAYLVATYIKSRK

Ga0334987_0004403_6095_6469

AGGAG

MGAIGKSFLMDALGLVAGAAAARVLTSSGKILPNIDAKIKSAGVIAIGAYFPKLLKGSLGQSIGSGMVAAGGLGLLQSTGVLGAIDNAMEIPVSVMAGDDLSVIAGYGEDNLSVIAGMDEEYSY

Ga0334987_0004403_8769_9185

N/A

MRNWILIGLAGLTGWYLLGKSQLAAKTKLIFKKLRYANKKFELVFGVQNPTAQTAKISAITGEVYLGDKLIADFSSFGEQKIAARSESELKIQASPTIGILQLITSKGWLKKGLAYTIKGTGNFDGIVVPFDYKANLI

NMPFamsDB