Scaffold Ga0334987_0004351

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0004351
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13535
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N
F098930	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0004351_11322_11660	F098930	N/A	MNESLEKQPSNRKLNQKRKFGFGSGRKRNQLQDKKINIRVSLSVETFKRVDSLSKRLDCSLSSAVERLIRTQESEAIEPTREVNWDEYKAKRQFYQLTDVLDASFRRRGRRA
Ga0334987_0004351_2766_2909	F039944	AGGGGG	LKAFDLFLSLALLALLGFAIAITSGALGGPSDLEMRIRASEPLNLEP
Ga0334987_0004351_4029_4337	F046179	AGGGGG	MPQWESEALALITGAGVANEDAPWVLECIQKAGDDIEEMDDADQFPLYMEYHANDKAALCNLDAETYADILACLGIDLHRLETLWERKHIDPPTDDVDWSLE
Ga0334987_0004351_4538_4762	F072111	GAG	LDKPQVGEGGGMKKQMILALAIFGHLFLFLFVDSLFEAPTKWKMWAFYVSSLLSVAVWAAYVIHEDDNPKGGAA
Ga0334987_0004351_5139_5333	F056323	N/A	MADDLKLPPAVVALWAADGYIPHVMREGMPLFDPVAVGKHIAKQLNELNKIDDGNDKTTTTGAD