Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0003960 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0003960 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14176
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14176

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (78.26%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F012452	Metagenome	280	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003960_1534_1782	F000403	AGG	MPAALVCIAINGKMGATGMSDFMEILNPQTMTGKMYFQGEVLEEYKIEQCDKCSKLVKLDSFGYQKGYDNHEKVIWFCGDCR
Ga0334987_0003960_1725_2363	F012452	AGG	MAGFLENYEGNKERTDRWLRTFPNGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNSNMKRWFCEDTTTSALMRVMALVMGGAEKATKETMEKVNAADAYDPWATKFGDVPSYKTAAEAEQAGIPSFGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCQPLWYVLRSTGKWEPQV
Ga0334987_0003960_4789_6036	F001731	GGTGG	MTIFNPVWRVTIGGIQYQTAILANLTITSGRTNIYEQANAGYINLEIINLTQSNVPIEINDSITIELQNSTATFVPIFGGSVVEVGISVAEVGSVDYAQRISIIGLGALSRLPKALTNGVLSKEFDGDQIYDVLSGVLFNTWQEVPGALTWATYDPTTQWQDAENSGLGDIDRPGNYELAARSSSRTDVYSLVAALATSGLGYIFESGTGQIGYADSTHRTNYLAANGYVDLTANHAVAPGLSIQKRAGDVRNSITLKYGATSSSEKSASDATSIGLYGELAQIITTTLHNASDAEDQADFYLSLRAFPRFNFNNITFELTNPELDDADRDSLISVFMGMPVNIANLPLNMNSGDYLGFVEGWTFNARYNQVSISMIVSPISFSLQAMRWNDVPVVEKWNTINPTLDWINATIVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0003960

Overview

Ecosystem & Geography

Associated Families

Sequences