NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0003710

Scaffold Ga0334987_0003710


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0003710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14545
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F003964Metagenome459Y
F009743Metagenome / Metatranscriptome313N
F053986Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0003710_10488_11123F001326GGAGMATYTVTEKYLLDNYAVLQLLTPSEIAVGSSIVVSSVDATFNGTYTVRALPQHLFIGIDSQGDLLFNYEVPIENQVLYAKTADDVDRVAASGTVVYNPNPTWITVAQLITYLGVSITNPSDDYTLAQQATNASNDFCWRRRQESGYTGDLLGSSPGHDVTLAALMYAAALWRSRGSVESMYATFDGMGSATQQSLTPIVKQLLGIPRPAVA
Ga0334987_0003710_12005_12304F009743AGGAGMKIKLQLKRSADAKPEYYYTNLFVVTEWERLERRNIQQLSSQPLYSDYCCWMHTILKLKGEQVGDTWRDWISKNPDIEILPVLDETDTNPTDAAPTAAS
Ga0334987_0003710_12414_12926F003964GGAGMSEVTATIEIAGLKEALKTLNKIDKTLRTQITREYRSIAKPVITDANSLIPSNIPLSGMARNWTTKSGFQMLPWEPGHKQKIAAKINTRAIKEYAGRTTNVGTFSIVYQSATGTMFDMSSAGRLGAALTARYGSRSRVMWKAWQQNENTVNAEMEKLVKHVMDLTNRELM
Ga0334987_0003710_3763_4041F053986GGAGMSEGVAWNQGELSEETRQMIMESNPMAKHTMAVFNLIDEIARPNHTPRKFREDHLIRGLRNMVIDFQLSGNDDYAECVILAIEELGGKVKPD
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