Scaffold Ga0334987_0003396

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0003396
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15317
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F034061	Metagenome	175	N
F070850	Metagenome	122	Y
F079784	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003396_1254_2231	F070850	N/A	MLLLEYSNMSAEATQTSQSITPSTGVVLLAFGKIQYYWAAYNLAFSIKKFNPSIRIALITDDKGKALSQCPELGVLTELINDIAQDDIYTNKKLDPAKLKVKLYDYLPYERNLYLDVDAISLKDIQPMIDELAQSGKDYISHTVGYHTIDKGRDFKEMQWAWADKIWAHFELPADAVMPAINSSMQWIVKGEQAAAIYRTAQELYLNNPIPLKDLRMKWGGSQPDELYMNISMAIHKVDPALKAYDKIKTSEGGMIHFAMTRGLTFQEITEKFYLQSYYGGNGFTPNFYIDWLDRMLKADHQAIGKKHIYYINRIVQNKFADAKR
Ga0334987_0003396_13959_14159	F079784	N/A	MRRKISKTRQVIDIIIKHWRSTMGSMIILASVFALIFKQISTETLAAIVAAMIAAGYIPKANNNEP
Ga0334987_0003396_4745_5653	F008936	N/A	MASFEELVKSKIKLLENVPEEIATAAIKAQRDAWRKIAPMLAEMDVDADGNIAQTEDNIRRIGLITDELNKSLAGGEYRDAVQKFLGSIDEGVQLTDDIAKKIDSSFQPNNVQRQLLNISKQNAIDAFFGSGLKQNVTQPFLEQLTANVAARAPLNQAVSALKGVIEGTEANDGRLLANVRTVAGTAQAIADRSYAAAVNEELGIEYFQYLGGEIATTRPFCEHREGAIFHRKEIEAWGNGKNSAGINDIRGGTWAGRIDGTDSRSIFTFVGGWNCRHYLVPVIVNRVPADVKARAEAEGYT
Ga0334987_0003396_8786_9823	F034061	N/A	MCYDKLLGLKGCDRPEPTTGLYIDDLGINQTLLGQLITNQYKSGVELFDAKLAFAWRKMSSDMLSRLSPMMKADTVIDSKRIGQVLTNASNIDLALGAGKYAGIRVTIDPNQLSFLNFYLSSLQIDIYTMSTPVEIFVFDMTTQKLVDSFFYQSEAVEEFIGRTFKANRRKMDLAFVYESLYDTTKMITKKGSCYDCGGGIRAVHICPFVDAIGIELTTDGFNVLSSKTKKYTQGMSMVYNVNCDREAWLCSIGGLMAMPLAYATAVEIFNYGLQISPNQRVNTTVSVNNGFATSDPNDGMIAARDVAATRYNEELAAMLQNMRLPDDNNCFDCRKNIKYVTALP
Ga0334987_0003396_9823_10281	F024717	N/A	MATVKEVNDRINALFSEWSGGFTPLFFAVLDMRREMFIRIFGTGTSGGSNTAGQKLPTKPYTPAYALIKQKNGRPPLELTGFLKRSFATDQSSVFNQGFGSAIYIQADEAGKVEGLQKLYGAIFQPTDEEQTRMLQLHAELLAEQIANQISK