Scaffold Ga0334987_0003384

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0003384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15334
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F047675	Metagenome	149	Y
F054621	Metagenome	139	N
F061848	Metagenome	131	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003384_10042_10206	F047675	AGG	MKYTILSPRIGTPGDTYEPLDGVNVDALIAGGFIEQSTVKAPKGAKTKTDTNEE
Ga0334987_0003384_2253_2768	F082693	AGG	MAQIDERVTIRLTGQDRLEINRLYRELETQTKQLGARNTFTTGYTPKASLTGLIAEYAFAKWFGVDFTIKPYDPTNDDVLGYQIKATERYNGCLIKQPHNPAGIYILGIVLNDGTEVSFRGWKDSTEIQRACYWRADVPKPGYFVPQAALWALSDLPETNELQTHRTTGVW
Ga0334987_0003384_2893_3105	F019829	N/A	MYTEKYRETFNNFVDEVFRPNYVPAPKPVDHSILLDELAILKEKFMQSGSDEHRFSAAVITAAMAVIIGI
Ga0334987_0003384_3153_3647	F061848	AGG	MNFLIAKIFTAVTISLSGLAFAYDAYNAPSALPVTPPVMVSLAPVLAVTTTTAAPLTDCQYALQLASQAGWPLTEMGTVARIIYRESGCHADAYNAQDTQGGSYGYYQINGYWCRPNKYWPIGWLQAKGLVTTCTDLFDPVVNTKSALAIWHNSGYGPWALPNP
Ga0334987_0003384_8610_9188	F054621	N/A	VAPLPLQIEGIQETLKLLNDIDPKYRRLVTKQIKNAGASILTEARQMVASFPNSKGNGAPLSGMVRGNLVKGRETTWRTDAVQKGFKIKVGVRGSKERYVNFDRGGYSEQVVFGAKPYRLMTVQSADAAGVIYDHAGRNTSSQFVTNLTVEEGKQPQVIDVAVEKNRPTVKADVLKVVEQVMAVTNRQMKVR