Scaffold Ga0334987_0003295

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0003295
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15545
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027818	Metagenome	193	Y
F029405	Metagenome / Metatranscriptome	188	Y
F043888	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003295_12269_13162	F043888	GAGG	MGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSGAAAYSGMRSGIESQLRQGLISYNDAASQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGITSAYKEVLGREAKEEEKTEALERFNQGYYSTVQDLRDSLAKGQEYQDKFNNSYLDNYYDTTFGKQATDAAGKKTGQRTFKFDKNLLPTYADTTKARAGVQLPNFADSFTGTPSEIEENLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSKEVARINRETSVFSNLVSGFWS
Ga0334987_0003295_1902_2282	F027818	N/A	MLSNTIIGNITYMEKAVHEGREFLAITIAVNDMYDGACRVRFNNSNGLLTAYNNGTLIVGHQLILSQYDVRISSIRTHYLKDGLMHQLKYPELALTRVRAIIGAAPRPKPEVVAPTVEPTLEEIAF
Ga0334987_0003295_21_224	F029405	N/A	MRDPDFIDEQRNADALDAMADRAYELEEAMRESEQDGWTGVFNDEISNEERYACDHYNERYVINDYH