NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0003251

Scaffold Ga0334987_0003251


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0003251 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15640
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F091589Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0003251_11071_11346F000324GGAGVNTLSPRFTVIQDGTTLNVYHASKGEGLPKHSHIYSHLTFCHSGSARISNERRSLVMTKDTQPVNLVAGEWHEIEALDDNTVFVNVFAETA
Ga0334987_0003251_6319_8190F091589AGAAGGMANYKDAPLADQPQADQPQAFTSVLGPGVPYSGPAEALRSIGQGLTFGTLDEIEAAVRTGSISGPEYERQRNLLREQQKQFGQDMPIAKTGLEIGGSLIAPFGAARQIGRLAPSTQAAVIGQTVPGQIARGTAIGAATGAASGYGFAEKDAGTEAVVGGVFGGLLGGSVPIVVDKAGSLIKNVLNSAGIGDQETAASKMLASYLKKDNLTPTEAQQALDELRKIGVPNPVIADLGKSLNDLAYSAYVVQSKAKGGTESFLVNRMIDQPNDIVKGLVEKAGLAKNVNGFEYLEALTANQSRLASQAYPDAYSKAIDAVPFRKYVDRPVFQKAYEEAVKRAGVYGNKLPDLSAIRNAQSVPTDILHQIKIGLDRVIDAETDSVTSKVSGYGRDVTKVKTEFNDLIKSLNPEYAKANAQFADAERIKNAFKMGEDYQRLDPKEAASKIRKLNPDEKEAFRLGVMADVNNRVGNFKGGDFTKQIFKSENQKLLLRNAFPDQASYAEFSQYVKGLGQQSATKQRVLGGSRTDENRAVRDEANLLGSLAQATTTGDPLSMLRAGGQALLSRARGISSESSEALQKRLFTVDPIEQTTILRELNRRAQRPQTGLLTGSAAVGSATGILGD
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