Scaffold Ga0334987_0003209

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0003209
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15750
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (42.42%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003209_12087_12569	F010835	AGG	MNAVALRTERALVDWLAAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAGDSDPSGGFVAYFATPTDFGINDTSERARTFSRSMTIFAAANS
Ga0334987_0003209_12566_13348	F013879	GGAG	MTPTVTVDTSRFDAAWKEYLPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAKELEDHITAAFQSAFDGSESKGIVVK
Ga0334987_0003209_13345_13746	F007260	GAG	MGNPSFLWQGVLVRCLPAAVTDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK
Ga0334987_0003209_14465_14608	F017997	N/A	VNVIEQIVTALLKWLTGLAKTPPTAEDAKPDKELKEKLLDRIDRAGG
Ga0334987_0003209_14781_14951	F031459	N/A	MQTDTNSSSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFIAAAIGLWKALKK
Ga0334987_0003209_2861_3190	F013412	GGAGG	MRHLWSRGFGRLHSDAEVITTDDGKRFLLAVVEFEKRTLGNGKPYAQRVTFRSFDPEDMDCVRMLTEGTHIMFDGDCDALAEKSATGWWYANPRITGRIHEIIPPHDAS