Scaffold Ga0334987_0002941

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334987_0002941

Scaffold Ga0334987_0002941

Overview

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0002941 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16455
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F081080	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0002941_11229_11447	F081080	N/A	MNFLLVFTVCSMVNGNCLDTMSTGKKFNTFRECTIAGYEFIAEQNKLFPIDQFDKVKPSFHFDCKETKEQST
Ga0334987_0002941_15545_16165	F004111	AGG	MKEMINQEKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYIIMKCIITKCDPEHIIATGYSKQYRDKAGYLEIAETFAITRALSFMGILLEDVTSKEEYEDLEIPVQPVNTKGTSSANIRYDEGTINELIKKVHYAPHTAKLDFLWRANKDLLNQIKIKDQSTYDSILNKFNSKRDEITTQNEV

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