Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0002925 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0002925 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16493
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16493

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F025745	Metagenome / Metatranscriptome	200	N
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0002925_2918_4009	F025745	N/A	MPANAPSITVAFGINGSFTNVSADLILTVDIRRGRMYQDVFIDSGTATVVLNNQSGAFDPSNTSSPWYNTLIAGMQVRITGNSTIIYTGYLEDNMVNQGIYPTVSLTFVDGLATFGKTIAPALATSAFSETAAARAARVLDIAQWPAGSRSLTGTTVMLATGQGISCLDMLEQCANVVGGRFYVSRTGVATLVPLANKFSRPTQLLFSDQGDANSVGYDGIITNPGTDYVYNQAIVDRGPGVLQYSSTFNSSVTTYGLKSKKLDAPSNTATAATNLSLYAARKDADAAVLVEQLDFTPIGIGALATDFLETELNDLVTVKRVTYDGRSISINCVVEGMAHSITADNWRVSYFTSLVDPYTIAL
Ga0334987_0002925_502_687	F000368	GGAG	MEQMKQISLSWFRAAAAAAIALFLAGETDFKTLGMAALAGAAGPILKWLDSSAVDFGRGS
Ga0334987_0002925_5577_6131	F028173	GAG	MADEVVILNGVKETLAALKDFDKDAVKRFNKVINNELSGAERDAKGLISEDPPMSGWRKADAAKGRTRGGAGWPGWNAAEIQSKITKTKAKGKVRGDYTTSAGALLNKSAAGSIFEVAGRKTKSSMAGGSSAQFLRTLGNRFGKASRVVWRVVDKDKARIEQNVARALSEAKAELQKHLNRERV
Ga0334987_0002925_7354_7524	F045100	GGA	MSYTITSDNFEGKAKGDSITEKELLESGLNIEALIAGEHLKDAKAPIKPATVEETK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0002925

Overview

Ecosystem & Geography

Associated Families

Sequences