Scaffold Ga0334987_0002798

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0002798
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16906
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009505	Metagenome / Metatranscriptome	317	Y
F023253	Metagenome	211	Y
F038004	Metagenome / Metatranscriptome	167	Y
F079389	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0002798_2546_2773	F009505	AGGAG	MIARIISMFMGRRLKEKAVDAVLDKVNLPDPVENAIKAAATGNVGDLLGGMGKDMAKEAVLGQITKKVPIKRPKK
Ga0334987_0002798_5315_5626	F079389	AGGA	MAPPRRLITRDMIQAAKDQGWHLTLTAEHYGMHRSSIAAACERFGIVLPMHPFSPQRVSPKSKVWIDIVDGETKPKVKLSASPAAVERTLRRLQNEKRLQALS
Ga0334987_0002798_6615_6833	F023253	GGAGG	MMFWRKREAVMPHRDIHAEAALGINSAAQVLPPKRFMDLVYWAIITNRQISTDDIDALANRLSRMAWERGRK
Ga0334987_0002798_7412_7582	F038004	GGA	MDTHIVLTALWDYRETLTIVNDTAPNPQISAKIDSVDRLIESYKKSYFALDRLGIY