Scaffold Ga0334987_0002299

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0002299
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18463
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F036674	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0002299_13222_13656	F016936	N/A	MTLELIHAELVRIREALEARPYAAGAPTHKAVATQAKTDEVLLPTEIVPDAGNVQVHFGKNKGVALSTLGDRSIAWYAQEPEPRLRNDGTPFPPRAEDVLLRNAARTLIHQKRGTLPAVTAPKAIPADHDVTTIMSVGDESVPF
Ga0334987_0002299_14434_14730	F024061	GGAGG	MNAGEIKNAAVINNATEQFRGLLETHFIAIARSAEESFIEDESQAEPKAKASFAVEWDALSLSPKVSVKIGWSVRFKDESESMVDPLQQKLDIVEGDK
Ga0334987_0002299_1844_2161	F036674	N/A	MAVRDFDPTQLSTDFDAILSQAGITFSFLGASVTGVWSSSRDAFADFENQRRDESKFTVFLTTSQVATTPAQSQTLVRAGITYFVEQVRFDAEGTGVEMDVCKVI