NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0002050

Scaffold Ga0334987_0002050


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0002050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19433
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F006260Metagenome / Metatranscriptome377Y
F022862Metagenome / Metatranscriptome212N
F036669Metagenome / Metatranscriptome169N
F047570Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0002050_17813_17995F047570AGAAGMKMTDENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGNFIEIDYLFDLAKKLKEINKEE
Ga0334987_0002050_7162_7398F022862N/AMSLRYYSYTSSALEMKFTPQQIELLIKTRDEIRDLTEKQHKLYDILIKELNVSVYAEDWLFDYIYNECGSVEDLENRM
Ga0334987_0002050_8498_8728F006260N/AMKKDLYMKSPNEKILVQSDDLKYDGKNIIIPSYYVNTILDYVKDYKLDGVPQVDIEDYQLFRNFLYDVQEYKNKGN
Ga0334987_0002050_8796_9344F036669N/AMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNNTDYDYWIVYDAVFIDGKMKDIKLTTFEATPNSERKKKDIEFHKKMQEWDEFKKTRRYKYLFNPYNKCLKFVCDKVYKACYFLSSRIWRVHNFLMIK
Ga0334987_0002050_9341_9583F001840N/AVKEEKDSEFLICDCYSHGLLVEKFDDEELCLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKKLKEFL
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