Scaffold Ga0334987_0001886

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0001886
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20213
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (32.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F022401	Metagenome	214	Y
F033011	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0001886_10929_11114	F009805	AGG	MDINIGTGEWMNSLMSRMTSAMDGDCFYLPTLMHLHAYSILKEDFFPDKAFKVEIKNSVD
Ga0334987_0001886_11309_11620	F004278	N/A	MWKVLFGDIIQAIIQWGKALWFEARLKARLTMIEWENQIEAELERKKQNKPIYIEHEIDPILQTGESQKLGGAIELRAPWYTDGIQPQRQDGMQEAPGMDDRV
Ga0334987_0001886_13744_13905	F033011	N/A	MTSNLTRFYFEFDEDSRTGCFEGLSFLDVETIEADQYENELQSQDISYTRVDL
Ga0334987_0001886_19263_19625	F022401	N/A	MDSTQEPVDTIKQWQDWYRSHRIIAEIDKPITTKDPNENMHDTSNAVETLSDTNPKAMWIEKAREHFADTLAEYQYELSGKDFYKAFYQAATEAMGYAEKEYQRTKELVDMLRYHHLSQD