Scaffold Ga0334987_0001459

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0001459
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22544
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F012668	Metagenome / Metatranscriptome	278	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F026565	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0001459_12912_13538	F008619	AGG	MSFQTIFEIQQSMTVNNRRTVGQQVARSGYITVAQYLTAVPWVFTIQPHQYLYYPQVRDVIQSIDNKDRQLSERIIFNSANLSWFTKYQGDVVAPAFTLASTPTPNTQVISVNVTAGSGYAFKAGDFCMIGGYTYKVTANVLQGTGVASVPIHRPLIGTPSSGADVYVGNSCSFAVVAESCPTYTLNPMTDGAFVQWDSPFVFREYIT
Ga0334987_0001459_13535_14185	F014737	GAG	MTTINAVTGAQINHAEFVRLTVGKTPVVYTFCNASAPITVDGITFANLGALLNVGDVQRDIKATSDDMTIQLTGIDPTNIGIILGSEIKGSLVEVWRGFFDSNNQIITTPTQQFFKRYQGIINSVSINEDFSTEKRIRVATCNIACSSMRRILENRLSGMKTNKSSWQFTYPADTSMNRVAEISNQYFDFGKPPQKNTQASETTVTTSNSAVEFNS
Ga0334987_0001459_14200_14646	F023109	N/A	MIKLATRYDIPRLLEIVEAYAYENPIQKLGEQSNHFPKYVEELLFSIIQGRGFIYVDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDDRANAMLKAGEVDFVCTSISANGPLIDFTTRGYKPLGATFVKE
Ga0334987_0001459_18763_19251	F026565	GGA	MAIFNKNTLLQVSGFDNEIIAGELVWQQKTYWNLTMTAADGVTPIDLTGATIDAQIIRRAVTNIQDTRNGLSFDIANYTPTPTPVELTIANRSNSTGFFTLVINDTTWSLIDSDPELDINAVDCVGFSGRIKIGFPANSTNPADDAIIFLLFLVRSDGIVVE
Ga0334987_0001459_7703_8047	F012668	N/A	MGIKRYENLAVNNVVNGIDSFGQYTTTLTKWFDTRGLVADVSNSVRISERYRVYQDLVNITLNYTPNMKQMVDNQNLYSITWRGFDWRITDVRESNDRMRVTFICYRNDPSTPV