Scaffold Ga0334987_0001448

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0001448
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22635
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0001448_13698_13937	F047677	AGAAG	MKWLKSVFSSETDASSKRVASILALVVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFANKKKGNDEGTN
Ga0334987_0001448_13918_14265	F077297	N/A	MTKEQIKGAIVITVAITICIIIQTLYIRIKQDEKTIEGYERRAEKATKVIDSLEATNVQRMLQIEELNQQLERNTAIYEANISAIDSLDRNGLKRAMHNLLSSLTEERYPGESND
Ga0334987_0001448_14249_14548	F070109	GAG	VSLTTEQVRSLLKLKAERDYLKTQFITLSKSDSISSIVITDQAKTIDAYTILNEKTSQDLVKAQEQLYKEAARKESWRNATLIGIPISFVGGIIFNLLF
Ga0334987_0001448_15518_16168	F066778	GAG	MNHGAHTFKTIPMSYTREPNWDKLKPSIDWDEQEEKLAEKLSKYINQKQTVMNQSVVKSQKFVRTWNSSNGDIHYFDIALENGEVGQVGVKDMNSPKIQVGATIHYTAEERTGPTGRKSTNFKLQNPMQYSGPSSAPSSAANSAVNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGESIIETKLAITNESADDEMPF
Ga0334987_0001448_17540_18280	F072341	N/A	MSKELGALVQQSFSRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVSMLQELTRNTYRSTSIKDWHNAFLYNAIGKDFERVDAFNLFSISFMADVLKRYEEYKSKIWRELNKIVIMPELEPKHIEAIDPVTALHEDVERWNAGKESWIEISAPYNCQRLFRQGIYKKSMWAPEVWARFEDIAKQKVEAKFKASNKVILGESAQAEFDGLQKIELSRIVYIDIIKQINNG
Ga0334987_0001448_19216_19566	F093876	N/A	MNLFRKKKEPVDLNAKLLPELCSCTIIQWNYSDDIGMEAIYAEDIPFMFDARKCVGVQAEVEFRNDGTYYVGQRTLALMQGVDNAIVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0334987_0001448_4754_4951	F082692	N/A	MTNPQNDIILSMTLLRSGVQGKSKEFKHAVGIYYAKHKVWQIRAINYTILIGLLSFITFTIYSIV