Scaffold Ga0334987_0001018

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0001018
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26662
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (45.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F029735	Metagenome	187	Y
F055679	Metagenome / Metatranscriptome	138	Y
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0001018_18098_18691	F029735	AGAAG	MAKDHRLALDRYIDYTKDPFVKKRKVDFDDSFLSKASSGTAPWTPSRFDESDLLRRIQTRKLQLNPTLNFVGDTPEQYEVFANIGRFTRKEGYDFSEGRAKTPLRPEEQPGFSPIWVEAYRISPTVKPEKRASNPMPRMSNPDPKGYMMAAAEKRAENEVKGSKSVAQLLSSNGESDTLTKESTDKKGEVIKDPEKA
Ga0334987_0001018_22009_22212	F095396	AGG	MNPKNKAERIVALDAIKEEAQNLASSGADSLDVQAFVSGAQKELVNQSPDTETYRKAATVAKKAKGS
Ga0334987_0001018_23639_23935	F055679	GGAG	MELSMDLTTGWKQHANVPGGYHLVYVDTWIGEISIVTGPKGSGLMAANDPGQEPTYEVWFPGMADPTGHLTLDEIKGIIKYMRQHEQERMRYSYDEDN
Ga0334987_0001018_24289_24477	F015587	N/A	MTALNIRKNTAAFLQGAATLVENAKIPAKGAIDAKLNEYRTRAAALIMPNDMAFIITPKNDV