NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000951

Scaffold Ga0334987_0000951


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27529
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (68.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F032198Metagenome180Y
F047555Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000951_10882_11217F024291AGGAGGMAGVSAQGLTFTFGGSNLTVTSVQVSDTQDLVDGSHLGIAPGGRREFVGGFATEREVTIDYISTNVLAAGTSGSLSISGPMSFSGAATLASASIGGSVGALISGSATFRVA
Ga0334987_0000951_12336_12596F032198N/AMSVKRLLREVDSEEIAEWYAYDQRHPLPDSWAQTARICRIIMAASGNYKKGDIPDEAVFIPTTVKQEQSQAQILNELMKLNQPRQG
Ga0334987_0000951_8378_8866F047555GGAGGMSLTASVLATVSARLQSRQGLATAFTEQPIEFSFDVGDCTKVWSDRRTFASVGYDEVDFATVGIGTVKLLCIKNLSKTSQIALSAGWTGSQFSVFRQDVTSWNFSPMINLGSLTLRGYPIREGGAMLLSCPNSSGFATTSGGSILRIGGTGGQNYEIYVMGN
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