Scaffold Ga0334987_0000821

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000821
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29578
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (34.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F028725	Metagenome	190	Y
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000821_10889_11437	F028725	AGAAG	MVELFKDATHKYYRFPKELNLPLERFSMSMGLMERISSGLSGSEMDKILSGMEKALSAGLSNPKNAAVVAAYIHVIRERQDTVIHRDLLLNLAATWVVRDDEDPGIIDPEIHKQKLELFEGMCKEASHDFFTLLDIDPLMPLLTMSPQDFQILWEYNVEAQRKLTQVLQHLTTHLDTGRKKQ
Ga0334987_0000821_18028_18567	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAIIVGACGTELVDPSLAEDVQDLLDAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNAFWNDVNNRRIGWILAYMCDSGKVIYIDPPQGLTTSAQFILPEQNNELQRYEVTFSWRDKNIPEQYDAPAGIFG
Ga0334987_0000821_18567_19517	F070850	N/A	MDSSTKKESQGTTSQGVVLLAFGKPQYYWAAYNLAFSIKKHNKDIRISAFFESKDKAIMHCPDIVEYVEKIGEIDINDIYTNKNLDPLKVKINLYKYLQYDRNLYLDVDAVALKDIQPLIDEYIQSGKNYISHTVGYHTIDKGRDFKEMQWAWADKLWEHFELSADTVVPAINSSIQWIVKGKEAESIFNEAMHLYFDKTMPLKDLRMKWGGGQPDELYMNVALANLGIDPALKHYEPIKGSEGGVVHFCMQRVQTIQEITENYYFQSYYGGAGFTPRFYIEWLDRMLSADHKALNKRHNYLIGRIVQNKFVDGKR
Ga0334987_0000821_22571_23482	F008936	AGGA	MASFDSLVRDKIRLFEEVPKRLETAAIKTQAEAWRKIKPLLEDMDVSADGNIEQTEDNIRRIGLISDELKKVLAGSEYRQAVKDFLDSIDKGVVLTNDIARTFEESFEPNEVQKQLLQISKQNAINAFFGSGLDQRFTQPFLEQLTTNIAARAPLREAVNALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNEELGIEWFEYLGGEIPTTRPFCEHREGEIFHRKEIEAWGAGKNSAGINDIRNGTWAGRIDGTDSKSIFTFVGGWNCRHYLVPVPDRKVPETVKARARAEGFID
Ga0334987_0000821_26113_27189	F024730	AGAAGG	MAALFFIFVKTKKMCIESLVGLRDCEGFEPSTGLYIDDLGINTTFLGQLITDQYNNGAELFADKRAFAWRKLSSDVLTKLSPMMKSDTVIEGRRIGQVVSNYINMQTALGAGNYAGIRLKIDPNTISYLNFYLADINIAITSGNTNVPILIFDMTTGKLLESFTYFQGSLDQYLGKTFTSARRKMDIAIVYESTMNAVKFTPKKGTCTSCGGGPKESHICPFVDAIGIELTTDGTNVLTSKSSRYTAGMSLNYSVSCDRQGWICSIGGTMALSLAYATAVEIYNYALTVSPNQRVNTTVIVNRGSNKTELQEGLMAARDIAATRYADELSAMLQNMRLPDDTHCWDCRRNMKYVTALP