NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000768

Scaffold Ga0334987_0000768


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000768 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30109
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (66.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050233Metagenome / Metatranscriptome145Y
F057212Metagenome136Y
F074591Metagenome / Metatranscriptome119Y
F086842Metagenome110Y
F095177Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000768_10229_10507F050233N/AMGLIELGQYAAALTAIAVLFGMSIKWGIVKPIKAYIDTATYPIHPDSNGGRALPDIANTVNRIESRIGDLDYRLNAIEEMVTKPTRTKKATN
Ga0334987_0000768_359_922F057212GGAMTTIITTTGNNFATLTADQGITSNLIHPDMHKIVQQDTWLIGVAGSARVCDQLQYSIEYPKPPIDVVKSGNWIKWMVVKVMPLIDNKIKDSEMDAEALLVTHGKAFLISENLSVLTASPYWAIGSGAELALGSLAEKQYAPGWHRNHDFSALRAIESASMHDPNTRGTVDQYRSYTNGKVIVKANGI
Ga0334987_0000768_4375_4575F095177N/AMERASLDEKHKIRKMLEYLGITHPAHQVEFMSALLDRPFDTTKMSRQDFYTLVSKLQNIQENRNKA
Ga0334987_0000768_4596_4718F074591GAGGMRNWNWTPRARLIGNLLAAIAVVGAGWVLFVGTWFALGGN
Ga0334987_0000768_5365_5706F086842AGGAMNKADVGKVLAVAMAIDARLGAADEAGFRAKVEGWSLALSETMDFEFARDAVGKHYKNSTDSLMPAHLNAMWTSHRSREHEIDNVRAIGTSPKSQGMPDDVRAKLVELGLKRP
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